PyMS

Spec sheet

Purpose

PyMS is a graphical interface for visualizing quantitative mycorrhizal fungi colonization of plant roots and analyzing the data.Read 9 Oct 2026 · pyms-jschnab.readthedocs.io

Audience

It is intended to help researchers unfamiliar with command-line software or seeking to increase productivity during data analysis.Read 9 Oct 2026 · pyms-jschnab.readthedocs.io

Deployment

desktopRead 23 Sep 2026 · pyms-jschnab.readthedocs.io

Free plan

YesRead 23 Sep 2026 · pyms-jschnab.readthedocs.io

Integrations

The repository lists pandas, NumPy, matplotlib, SciPy, statsmodels, and TkInter as dependencies; it does not describe third-party service integrations.Read 9 Oct 2026 · github.com

Security

The opened documentation and repository pages do not state security certifications or compliance claims.Read 9 Oct 2026 · github.com

Support

The documentation directs users with questions to email [email protected].Read 9 Oct 2026 · pyms-jschnab.readthedocs.io

License

The GitHub repository identifies the project as GPL-3.0 licensed.Read 9 Oct 2026 · github.com

Founded

2019Read 19 Oct 2026 · pyms-jschnab.readthedocs.io

Bayesian analysis

NoRead 23 Sep 2026 · pyms-jschnab.readthedocs.io

Data import formats

CSVRead 23 Sep 2026 · pyms-jschnab.readthedocs.io

Dependencies

The repository lists Python 3, pandas, NumPy, matplotlib, SciPy, statsmodels, and TkInter as dependencies.Read 9 Oct 2026 · github.com

Input limit

Input must be a specifically formatted CSV file containing colonization data quantified with a modified grid-line intersect method or an equivalent method.Read 9 Oct 2026 · pyms-jschnab.readthedocs.io

Installation

The repository documents installation with pip using the package name pyms-plot and running PyMS from the command line.Read 9 Oct 2026 · github.com

Output

Statistical test p-values are saved to a text file in the same folder as the input CSV.Read 9 Oct 2026 · pyms-jschnab.readthedocs.io

Regression models

NoRead 23 Sep 2026 · pyms-jschnab.readthedocs.io

Release

The PyPI project page lists version 0.9.1, released April 17, 2019.Read 9 Oct 2026 · pypi.org

Scripting support

NoRead 23 Sep 2026 · pyms-jschnab.readthedocs.io

Statistical tests

YesRead 23 Sep 2026 · pyms-jschnab.readthedocs.io

Statistics

It supports Mann–Whitney tests for two genotypes and Kruskal–Wallis tests followed by Dunn post-hoc tests for multiple genotypes.Read 9 Oct 2026 · pyms-jschnab.readthedocs.io

Visualization

Users can choose grouping and color parameters, analyze a CSV file, and save the generated figure.Read 9 Oct 2026 · github.com

Plans and prices

Every PyMS plan and price →

Where Specifiction places it

• Statistical Analysis Software#42 of 1068.0