Bioconductor vs Private Packagist
Bioconductor
bioconductor.orgPrivate Packagist
packagist.comSide by side
| Figure | Bioconductor | Private Packagist |
|---|---|---|
| Price from | Free | €15.58/mo |
| Free plan | Yes | — |
| Free trial | — | Yes |
| Open source | Yes | — |
| Web | Yes | Yes |
| Windows | Yes | — |
| macOS | Yes | — |
| Linux | Yes | Yes |
| API | — | Yes |
| Self-hosted | Yes | Yes |
| Plans published | 2 | 3 |
| Spec score · Package Registries | 9.1 (#1) | 7.9 (#15) |
| Integrations | SourceForge lists integrations with R and Docker. | Organization synchronization is available for GitHub, Bitbucket, and GitLab, including synchronization of teams, members, permissions, and repositories. |
| Intended users | The project serves researchers and data scientists working with biological and genomic data. | The company describes Private Packagist as providing businesses with functionality tailored to their requirements and offers solutions for agencies and vendors. |
| Purpose | Bioconductor develops and shares open-source software for rigorous, reproducible analysis of biological data. | Private Packagist makes private PHP repositories available through Composer and provides a controlled repository for package installs. |
| Support | SourceForge lists online support, documentation and videos as available support resources. | Cloud plans include email and chat support, and the pricing FAQ says messages sent by email or website chat receive a guaranteed next-business-day response. |
Plans
Private Packagist
- Private Packagist Cloud€187 a year
- Private Packagist Self-Hosted — Kubernetes, Helm Chart€3,900 a year
- Private Packagist Self-Hosted — Kubernetes, Kots€5,900 a year
In their own words
Bioconductor
Bioconductor develops and shares free, open-source software for rigorous and reproducible analysis of biological data. It serves researchers and data scientists working with biological and genomic datasets. The project uses R, with most components distributed as R packages. Those packages support analysis of DNA microarray, sequence, flow, SNP, and other genetic or genomic data. Tools can associate genomic data with biological metadata from sources such as GenBank, Entrez genes, and PubMed. Each package includes one or more task-oriented vignettes, and reproducible research is a stated project goal. Bioconductor maintains a stable release updated twice a year and a development version for new features and packages. Each release is designed for a specific R version; the current release page lists Bioconductor 3.23 with R 4.6.0. Docker containers with preinstalled R and Bioconductor versions support reproducible environments. The project documents container deployment with Amazon ECS, Google Kubernetes Engine, Microsoft Azure Container Instances, and Docker Desktop or Docker Engine. Help is available through its Support site and community chat. The project began in 2001 and is overseen by a core team.
Private Packagist
Private Packagist has no write-up on Specifiction yet; its figures are above.