Best Ecommerce Accounting Software in 2026

Bookkeep

Bookkeep suits ecommerce and retail businesses, Shopify brands, and the accountants supporting them.

OnGravy suits business owners and chartered accountants seeking bookkeeping, GST, and payroll tools.

Entriwise

It suits e-commerce sellers who need to move sales-channel transactions into accounting or ERP systems and reconcile payouts.

Bizzle

It is aimed at small businesses, including sole traders, limited companies, trades, salons, clinics and hospitality businesses.

Webgility suits multi-channel sellers and businesses managing ecommerce accounting workflows.

It suits Shopify merchants who want automated ecommerce accounting in Xero or QuickBooks Online.

ConnectBooks

ConnectBooks suits ecommerce sellers and bookkeepers who need marketplace accounting, profit reporting and inventory visibility.

Starter is described for solo sellers, Growth for multi-channel brands, Pro for scaling sellers managing by SKU margin, and Scale for multi-entity operators and practices.

Ecommatrics suits Indian marketplace sellers who want to reconcile uploaded payment reports and review SKU-level profit.

WIMOnline is aimed at Indian traders, manufacturers, retailers, service businesses and chartered accountants needing billing, accounting and GST tools.

Brightpearl

Brightpearl suits retailers and wholesalers managing orders, inventory, and sales across online and offline channels.

ZupERP

ZupERP is aimed at Indian sellers on Amazon, Flipkart, Meesho and Myntra, as well as D2C sellers using Shopify or WooCommerce.

Xettle is presented for marketplace sellers, accountants and bookkeepers, and accounting firms or agencies working with Australian marketplace settlements and Xero.